[1] Yong Wang*, Jiaomei Huang. LIR: A package for identification of long inverted repeats in genomes. Genomics, Proteomics & Bioinformatics, 2017, 15: 141-146.

[2] Li-Sheng He, Peiwei Zhang, Jiaomei Huang, Fang-Chao Zhu, Antoine Danchin, Yong Wang*. The enigmatic genome of an obligate ancient Spiroplasma symbiont in a hadal holothurian. Appl Env Microbiol. 2018, 84: e01965-17

[3] Yong Wang*, Fang-Chao Zhu, Li-Sheng He, Antoine Danchin*. Unique tRNA gene profile suggests paucity of nucleotide modifications in anticodons of a deep-sea symbiotic Spiroplasma. Nucleic Acids Res. 2018, 46：2197-2203.

[4] Yong Wang*, Jiaomei Huang, Guojie Cui, Takuro Nunoura, Y. Takaki, Wenli Li, Jun Li, Zhaoming Gao, Takai Ken, Aiqun Zhang, Ramunas Stepanauskas. Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean. Environ. Microbiol. 2019,21:716-729.

[5] Yong Wang*, Zhaoming Gao, Jun Li, Lisheng He, Guojie Cui, Wen-Li Li, Jun Chen, Yongzhi Xin, Dusi Cai, Aiqun Zhang. Hadal water sampling by in situ microbial filtration and fixation (ISMIFF) apparatus. Deep-Sea Res I. 2019, 144:132-137

[6] Jiaomei Huang, Brett Baker, Jiaotao Li, Yong Wang*. New microbial lineages capable of carbon fixation and nutrient cycling in deep-sea sediments of the northern South China Sea. Appl. Env. Microbiol. 2019, 85: 00523-19

[7] Zhaoming Gao, Jiaomei Huang, Guojie Cui, Wenli Li, Jun Li, Zhanfei Wei, Jun Chen, Yongzhi Xin, Dusi Cai, Aiqun Zhang, Yong Wang.* In situ meta-omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench. Environ. Microbiol. 2019, 21:4192-4108

[8] Zhanfei Wei, Wenli Li, Jun Li, Jun Chen, Yongzhi Xin, Lisheng He, Yong Wang*. Multiple in situ nucleic acid collections (MISNAC) from deep-sea waters. Front. Mar. Sci. 2020, 18: 00081.

[9] Yong Wang*, Jiaomei Huang, Yongli Zhou, Alexandra Almerda, Robert Finn, Antoine Danchin, Lisheng He. Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli. BMC Genomics 2020, 21: 408.

[10] Guojie Cui, Yingli Zhou, Wenli Li, Zhaoming Gao, Jiaomei Huang, Yong Wang.* A novel bacterial phylum that participates in carbon and osmolyte cycling in the Challenger Deep sediments. Environ. Microbiol. 2020, 23: 3758-3772

[11] Yong Wang*, Wenli Li, Qingmei Li, Yingli Zhou, Zhaoming Gao, Dong Feng. Deep-sea carbonates are a reservoir of fossil microbes previously inhabiting cold seeps. Front. Mar. Sci. 2021, 8: 698545.

[12] Wenli Li, Xiyang Dong, Rui Lu, Pengfei Zheng, Dong Feng, Yong Wang.* Microbial ecology of sulfur cycling near the sulfate–methane transition of deep-sea cold seep sediments. Environ. Microbiol. 2021, 23: 6844-6858.

[13] Yong Wang*, Wenli Li, Brett Baker, Yingli Zhou, Lisheng He, Antoine Danchin, Qingmei Li, Zhaoming. Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines. Environ. Microbiol. Rep. 2022,14: 308-319

[14] Yingli Zhou#, Paraskevi Mara#, Guojie Cui, Virginia Edgcomb, Yong Wang*. Microbiomes in the Challenger Deep slope and bottom-axis sediments. Nature Communications. 2022, 13: 1515  

[15] Pengfei Zheng, Zhanfei Wei, Yingli Zhou, Qingmei Li, Qi Zhi, Xiaoping Diao, Yong Wang*. Genomic evidence for the recycling of complex organic carbon by novel Thermoplasmatota clades in deep-sea sediments. mSystems. 2022, 00072-22.

[16] Yong Wang*#, Hong-Yu Bi#, Hua-Guan Chen, Peng-Fei Zheng, Ying-Li Zhou, Jiang-Tao Li. Metagenomics reveals dominant unusual sulfur oxidizers inhabiting active hydrothermal chimneys from the Southwest Indian Ridge. Frontier in Microbiology, 2022, 13:861795.

[17] Xiyang Dong#, Chuwen Zhang#, Yongyi Peng, Hong-Xi Zhang, Ling-Dong Shi, Guangshan Wei, Casey R J Hubert, Yong Wang*, Chris Greening. Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments. Nature Communications, 2022, 13: 4885.

[18] Ying-Li Zhou#, Paraskevi Mara#, Dean Vik, Virginia P Edgcomb, Matthew B Sullivan, Yong Wang*. Ecogenomics reveals viral communities across the Challenger Deep oceanic trench. Communications Biology, 2022, 5: 1055.

[19] Yong Wang*, Jun Li, Zhanfei Wei, Qingmei Li, Yingli Zhou, Wenli Li, Jun Chen, Suixue Wang,   Yongzhi Xin, Aiqun Zhang. In situ cultivation of deep-sea water with bicarbonate fueled a different microbial community. Acta Oceanologica Sinica, 2022, 41:1-7

[20] Tao-Shu Wei, Zhao-Ming Gao*, Lin Gong, Qing-Mei Li, Ying-Li Zhou, Hua-Guan Chen, Li-Sheng He, Yong Wang*. (2023) Genome-centric view of the microbiome in a new deep-sea glass sponge species Bathydorus sp. Front. Microbiol. 2023, 14:1078171

[21] Rulong Liu, Yong Wang*, Gordon Webster*. (2023) Microbiology of deep-sea carbon cycling. Frontiers in Microbiology, 14, 1236593.

[22] Zhaoming Gao, Ting Xu, Huaguan Chen, Rui L, Jun Tao, Hongbin Wang, Jianwen Qiu*, Yong Wang*. (2023) Early genome erosion and internal phage-symbiont-host interaction in the endosymbionts of a cold-seep tubeworm. iScience, 26, 107033.

[23] Hongxi Zhang, Taoshu, Jiushuang Zhang, Qingmei Li, Liang Fu, Lisheng He, Yong Wang*. (2024) Microbial mediation of cryptic methane cycle in semiclosed marine water column. The Innovation Geoscience, 2, 100082.

[24] Hongxi Zhang, Taoshu Wei, Qingmei Li, Liang Fu, Manjie Li, Lisheng He, Yong Wang*. (2024) Metagenomic 18S rDNA reads revealed zonation of eukaryotic communities in the Yongle blue hole. Frontiers of Microbiology, 15, 1420899.

[25] Binghe Zhao, Mucong Zi, Xiaoyu Zhang*, Yong Wang*. (2024) Microbial communities and metagenomes in methane-rich deep coastal sediments. Scientific Data, 11: 1043.

[26] Zhuobo Li, Yinghui He, Hongxi Zhang, Haifeng Qian, Yong Wang* (2024) Biotransformations of arsenic in marine sediments across marginal slope to hadal zone. Journal of Hazardous Materials, 135955.