[1] Ziqi Gao, Yifan Niu, Jiashun Cheng, Jianheng Tang, Tingyang Xu, Peilin Zhao, Lanqing Li, Fugee Tsung, Jia Li. Handling Missing Data via Max-Entropy Regularized Graph Autoencoder. AAAI 2023.

[2] Ziqi Gao, Chenran Jiang, Jiawen Zhang, Xiaosen Jiang, Lanqing Li, Peilin Zhao, Huanming Yang, Yong Huang, Jia Li. Hierarchical Graph Learning for Protein–Protein Interaction. Nature Communications, 14(1): 1093, 2023.

[3] Ziqi Gao, Zijing Liu, Yu Li, Jia Li. Towards Stable Representations for Protein Interface Prediction. NeurIPS 2024.

[4] Ziqi Gao, Qichao Wang, Aochuan Chen, Zijing Liu, Bingzhe Wu, Liang Chen, Jia Li. Parameter-Efficient Fine-Tuning with Discrete Fourier Transform. ICML 2024.

[5] Ziqi Gao, Tao Feng, Jiaxuan You, Chenyi Zi, Yan Zhou, Chen Zhang, Jia Li. Deep Reinforcement Learning for Modelling Protein Complexes. ICLR 2024.

[6] Ziqi Gao, Xiangguo Sun, Zijing Liu, Yu Li, Hong Cheng, Jia Li. Protein Multimer Structure Prediction via Prompt Learning. ICLR 2024.